CellProfiler 1.0 Help
Moderators: klmadden, mbray, David Logan, Anne Carpenter
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- CellProfiler 2.0 Beta: Windows 32-bit/64-bit installations
by mbray » Tue Apr 13, 2010 9:18 am - 0 Replies
- 48 Views
- Last post by mbray
Tue Apr 13, 2010 9:18 am
- CellProfiler 2.0 Beta: Windows 32-bit/64-bit installations
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- New CellProfiler 1.0 release, plus 2.0 beta
by mbray » Fri Apr 02, 2010 11:13 am - 0 Replies
- 73 Views
- Last post by mbray
Fri Apr 02, 2010 11:13 am
- New CellProfiler 1.0 release, plus 2.0 beta
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- New CellProfiler Release! Plus Developer Resources!
by David Logan » Wed Jun 10, 2009 9:21 am - 3 Replies
- 377 Views
- Last post by timsmith
Tue Jun 16, 2009 3:25 pm
- New CellProfiler Release! Plus Developer Resources!
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- Changes to Developer CellProfiler code for MATLAB R2008b
by mbray » Wed Dec 17, 2008 4:32 pm - 0 Replies
- 662 Views
- Last post by mbray
Wed Dec 17, 2008 4:32 pm
- Changes to Developer CellProfiler code for MATLAB R2008b
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- 5811 "Bugfix" branch release
by David Logan » Mon Nov 10, 2008 5:55 pm - 0 Replies
- 475 Views
- Last post by David Logan
Mon Nov 10, 2008 5:55 pm
- 5811 "Bugfix" branch release
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- New version of CellProfiler
by David Logan » Wed Sep 24, 2008 8:51 am - 7 Replies
- 748 Views
- Last post by tpan
Tue Oct 07, 2008 11:22 pm
- New version of CellProfiler
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- Topics
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- Developer Notes
by klmadden » Tue Jul 21, 2009 3:36 pm - 8 Replies
- 311 Views
- Last post by mbray
Sat Feb 27, 2010 5:35 pm
- Developer Notes
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- FAQ
by David Logan » Wed Dec 23, 2009 11:35 am - 0 Replies
- 385 Views
- Last post by David Logan
Wed Dec 23, 2009 11:35 am
- FAQ
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- README - Before Posting
by David Logan » Fri May 01, 2009 10:26 am - 0 Replies
- 516 Views
- Last post by David Logan
Fri May 01, 2009 10:26 am
- README - Before Posting
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- Quantifying colours in histology
1, 2
by William v G. » Tue Sep 22, 2009 7:23 am - 17 Replies
- 464 Views
- Last post by mbray
Fri Aug 20, 2010 12:37 pm
- Quantifying colours in histology
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- is there manual crop module?
by huwenhuo » Thu Mar 18, 2010 12:58 pm - 4 Replies
- 93 Views
- Last post by mbray
Fri Aug 20, 2010 10:41 am
- is there manual crop module?
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- Unable to create batch files
by johnny101er » Wed Aug 11, 2010 11:42 am - 4 Replies
- 23 Views
- Last post by johnny101er
Fri Aug 13, 2010 8:47 am
- Unable to create batch files
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- Split cells
by cgardner » Mon Aug 09, 2010 4:27 pm - 1 Replies
- 9 Views
- Last post by mbray
Tue Aug 10, 2010 10:17 am
- Split cells
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- Tracking based on an object measurement
by kryall » Mon Jul 12, 2010 9:51 am - 1 Replies
- 14 Views
- Last post by mbray
Wed Jul 14, 2010 9:15 am
- Tracking based on an object measurement
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- problems installing CP 01 on windows XP 32 bit
by calciumflux » Thu Jul 08, 2010 1:49 pm - 1 Replies
- 12 Views
- Last post by mbray
Fri Jul 09, 2010 10:05 am
- problems installing CP 01 on windows XP 32 bit
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- Final adjustments (My counts and CP's do not match)
by Gozde » Fri May 14, 2010 8:40 am - 4 Replies
- 74 Views
- Last post by mbray
Fri May 28, 2010 5:28 pm
- Final adjustments (My counts and CP's do not match)
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- Exclude Objects
by Micael » Tue Mar 02, 2010 4:56 am - 4 Replies
- 120 Views
- Last post by mbray
Sat May 22, 2010 3:26 pm
- Exclude Objects
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- MatLab Error Messages
by Erin » Mon May 10, 2010 12:51 pm - 3 Replies
- 80 Views
- Last post by David Logan
Tue May 11, 2010 11:09 am
- MatLab Error Messages
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- measure_AreaOccupierd per Cell
by Skadi » Thu Nov 27, 2008 6:17 am - 4 Replies
- 318 Views
- Last post by mbray
Tue Apr 20, 2010 4:20 pm
- measure_AreaOccupierd per Cell
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- flex files grouping problem
by esner » Wed Mar 31, 2010 3:27 am - 12 Replies
- 143 Views
- Last post by David Logan
Tue Apr 20, 2010 1:10 pm
- flex files grouping problem
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- Problems exporting demo examples to CellProfiler Analyst
by derek » Tue Jul 15, 2008 4:57 pm - 4 Replies
- 728 Views
- Last post by afraser
Wed Apr 14, 2010 2:03 pm
- Problems exporting demo examples to CellProfiler Analyst
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- Cells touching image borders
by cgardner » Fri Sep 12, 2008 2:29 pm - 4 Replies
- 373 Views
- Last post by mbray
Tue Apr 13, 2010 2:52 pm
- Cells touching image borders
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- Identifying large obgects
by leopard » Mon Apr 12, 2010 5:18 am - 0 Replies
- 111 Views
- Last post by leopard
Mon Apr 12, 2010 5:18 am
- Identifying large obgects
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- MCRInstaller fails on Windows 7 64-bit machine
by jubersax » Tue Apr 06, 2010 8:31 pm - 3 Replies
- 334 Views
- Last post by jubersax
Thu Apr 08, 2010 1:02 pm
- MCRInstaller fails on Windows 7 64-bit machine
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- colonies: partial overlap treatment ?
by wouldbeuser » Wed Apr 07, 2010 3:42 am - 3 Replies
- 50 Views
- Last post by David Logan
Thu Apr 08, 2010 10:33 am
- colonies: partial overlap treatment ?
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- help on non stain, bad background cell count
by huwenhuo » Mon Mar 08, 2010 12:22 pm - 5 Replies
- 156 Views
- Last post by mbray
Fri Apr 02, 2010 10:02 am
- help on non stain, bad background cell count
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- Nuclei quantification and ExportToExcel problem
by dgr » Mon Mar 29, 2010 10:25 am - 3 Replies
- 127 Views
- Last post by mbray
Thu Apr 01, 2010 10:31 am
- Nuclei quantification and ExportToExcel problem
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- How to identify nuclei in my DIC picture
by lily0204 » Tue Mar 23, 2010 2:04 am - 1 Replies
- 120 Views
- Last post by mbray
Mon Mar 29, 2010 11:55 am
- How to identify nuclei in my DIC picture
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- cell profiler Nucleus orientation assay ,,,Need some advice
by arunred20 » Wed Mar 24, 2010 4:24 pm - 1 Replies
- 94 Views
- Last post by mbray
Mon Mar 29, 2010 11:49 am
- cell profiler Nucleus orientation assay ,,,Need some advice
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- Help_ERK dots
by Francesca » Wed Mar 17, 2010 11:34 am - 1 Replies
- 85 Views
- Last post by mbray
Fri Mar 26, 2010 4:46 pm
- Help_ERK dots
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- Problems getting started
by imgen » Mon Mar 15, 2010 8:04 am - 7 Replies
- 240 Views
- Last post by imgen
Fri Mar 26, 2010 10:57 am
- Problems getting started
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- Fluorescent Muscle Sections
by drumnut007 » Mon Mar 08, 2010 1:41 pm - 8 Replies
- 212 Views
- Last post by mbray
Wed Mar 24, 2010 3:14 pm
- Fluorescent Muscle Sections
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- Loading data in MySql
by leopard » Fri Mar 12, 2010 8:40 am - 2 Replies
- 139 Views
- Last post by leopard
Thu Mar 18, 2010 7:00 am
- Loading data in MySql
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- Counting foci in bacterial cells
by Martin.sim » Tue Mar 16, 2010 11:12 am - 1 Replies
- 133 Views
- Last post by klmadden
Wed Mar 17, 2010 3:54 pm
- Counting foci in bacterial cells
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- problem installing cellProfiler on linux 64 bit
by ssampat4 » Tue Mar 16, 2010 9:41 am - 1 Replies
- 99 Views
- Last post by klmadden
Wed Mar 17, 2010 8:57 am
- problem installing cellProfiler on linux 64 bit
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- Count speckle area on cropped images
by jliu » Mon Mar 15, 2010 2:10 pm - 2 Replies
- 94 Views
- Last post by jliu
Tue Mar 16, 2010 12:23 pm
- Count speckle area on cropped images
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- Converting 24 bit images to 8 bit
by ewinkfield » Mon Mar 15, 2010 9:34 am - 1 Replies
- 135 Views
- Last post by klmadden
Mon Mar 15, 2010 9:51 am
- Converting 24 bit images to 8 bit
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- Finding overlapping cells
by leopard » Fri Mar 05, 2010 5:40 am - 2 Replies
- 123 Views
- Last post by leopard
Tue Mar 09, 2010 7:26 am
- Finding overlapping cells
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- Apoptosis-TUNEL measurements
by ssedej » Mon Oct 26, 2009 2:13 pm - 10 Replies
- 276 Views
- Last post by mbray
Wed Mar 03, 2010 11:53 am
- Apoptosis-TUNEL measurements
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- counting cells in a subregion of an image
by mbaudet » Sun Feb 21, 2010 11:14 am - 7 Replies
- 201 Views
- Last post by mbray
Tue Mar 02, 2010 10:50 am
- counting cells in a subregion of an image
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- Counting the nuclei in the labelled cells
by Gozde » Thu Dec 03, 2009 11:03 am - 13 Replies
- 372 Views
- Last post by mbray
Sat Feb 27, 2010 5:52 pm
- Counting the nuclei in the labelled cells
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- TrackObject Module Missing ID #'s in Output
by kryall » Thu Feb 18, 2010 4:42 pm - 3 Replies
- 100 Views
- Last post by mbray
Sat Feb 27, 2010 5:40 pm
- TrackObject Module Missing ID #'s in Output
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- long loading time
by michalp » Tue Feb 23, 2010 7:46 am - 1 Replies
- 83 Views
- Last post by mbray
Tue Feb 23, 2010 7:54 pm
- long loading time
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- Track Objects: merge identified objects
by Karvoi » Tue Feb 16, 2010 6:18 am - 1 Replies
- 116 Views
- Last post by mbray
Tue Feb 16, 2010 10:10 am
- Track Objects: merge identified objects
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- quantify contact between two types of cells (red and green)
by Jose » Thu Feb 11, 2010 6:54 am - 6 Replies
- 178 Views
- Last post by Jose
Tue Feb 16, 2010 3:11 am
- quantify contact between two types of cells (red and green)
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- Need help on ExampleYeastColonies_BT_PIPE.mat
by crisgil » Thu Dec 10, 2009 1:58 pm - 4 Replies
- 180 Views
- Last post by mbray
Thu Jan 28, 2010 9:16 pm
- Need help on ExampleYeastColonies_BT_PIPE.mat
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- How to segment objects in 1 colour from images
by bal » Wed Jan 27, 2010 1:05 pm - 1 Replies
- 120 Views
- Last post by mbray
Thu Jan 28, 2010 8:14 pm
- How to segment objects in 1 colour from images
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- error message
by Gozde » Wed Jan 27, 2010 2:37 pm - 1 Replies
- 107 Views
- Last post by mbray
Thu Jan 28, 2010 8:06 pm
- error message
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- Problem accessing the object count data in CalculateMath
by derek » Tue Jan 26, 2010 1:38 pm - 1 Replies
- 126 Views
- Last post by mbray
Thu Jan 28, 2010 5:15 pm
- Problem accessing the object count data in CalculateMath
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- Error in export data to excel
by paradise » Tue Jan 19, 2010 3:04 pm - 2 Replies
- 112 Views
- Last post by paradise
Tue Jan 19, 2010 4:01 pm
- Error in export data to excel
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- Module:MeasureImageGranularity
by ahbeck » Thu Jan 07, 2010 4:39 pm - 1 Replies
- 120 Views
- Last post by klmadden
Mon Jan 11, 2010 4:29 pm
- Module:MeasureImageGranularity
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- Cell ids in movies
by Barak » Tue Dec 08, 2009 12:27 pm - 1 Replies
- 120 Views
- Last post by mbray
Tue Dec 08, 2009 3:42 pm
- Cell ids in movies
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- How to save data and keep them for every cycle?
by LWY » Thu Nov 12, 2009 9:41 pm - 13 Replies
- 270 Views
- Last post by mbray
Thu Dec 03, 2009 9:45 am
- How to save data and keep them for every cycle?
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- How to export to excel?
by LWY » Wed Dec 02, 2009 2:03 am - 2 Replies
- 134 Views
- Last post by LWY
Wed Dec 02, 2009 9:51 pm
- How to export to excel?
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